PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039869
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 191aa    MW: 21518.8 Da    PI: 10.3868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039869genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057999323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++Cgk F r  nL+ H r H
  Lus10039869 79 CEICGKGFQRDQNLQLHRRGH 99
                 *******************88 PP

2zf-C2H212.60.00041153175123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C k++  +s+ k H +t+
  Lus10039869 153 WKCEKCAKRYAVQSDWKAHSKTC 175
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.08E-77699No hitNo description
Gene3DG3DSA:3.30.160.601.2E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4897799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-5141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.08E-7148173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MLEKMGSSAE ESSTTILSST TGFSHDHHQL LSSSASIINP PPPSAKKKRN LPGNPGKYPE  60
AEVIALSPKT LMATNRFLCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIRKRVYVC  120
PEKSCVHNHP SRALGDLTGI KKHFCRKHGE KKWKCEKCAK RYAVQSDWKA HSKTCGTREY  180
KCDCGTLFSR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697678.11e-103PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-102IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A078G0P71e-103A0A078G0P7_BRANA; BnaC05g02110D protein
STRINGBra015271.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-100C2H2 family protein